Journal Club

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Our Journal Club is a weekly meeting where students give presentations on publications which are of interested to the Systems Biology oriented audience. To guarantee relevance of the publications being presented, each lab has prepared a list of publications (see below) they think are of interest to the audience. Students who are willing to get credit points are required to enroll to the course SGN-XXYY, "Seminar ZZ".

Select your favorite publication from the list below, inform the chair (timo.p.erkkila@tut.fi) and we'll reserve you a time slot. Confirmed presentations will be added to Google Calendar.

When: Tuesday
Where: TE307 (if not announced otherwise)
Time: 14:15-15:00


Publications to choose from:

Ernst et al., "Mapping and analysis of chromatin state dynamics in nine human cell types", Nature, 473:43-49, 2011

Grabherr et al., "Full-length transcriptome assembly from RNA-Seq data without a reference genome", Nature Biotechnology, 29:644-652, 2011

DePristo et al., "A framework for variation discovery and genotyping using next-generation DNA sequencing data", Nature Genetics, 43:491-498, 2011

Uri Alon, "Network motifs: theory and experimental approaches", Nature Reviews Genetics, 8, 450-461, June 2007

Yaneer Bar-Yam et al., "Attractors and Democratic Dynamics", Science, 20, February 2009: 1016-1017

Stuart A. Kauffman, "Metabolic stability and epigenesis in randomly constructed genetic nets", Journal of Theoretical Biology, 22:437-467, 1969

Daniel T. Gillespie, "Exact Stochastic Simulation of Coupled Chemical Reactions", The Journal of Physical Chemistry 81 (25): 2340.2361, 1977

Sui Huang, "Systems biology of stem cells: three useful perspectives to help overcome the paradigm of linear pathways", Phil. Trans. R. Soc. B, 366, 2247-2259, 2011

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**Old journal club page could be found here.